Selected Journal Publications

Crook, SM, JA Bednar, SD Berger, RC Cannon, AP Davison, M Djurfeldt, J Eppler, B Kriener, S Furber, B Graham, M Hull, HE Plesser, L Schwabe, L Smith, V Steuber, S van Albada (2012) Creating, documenting and sharing network models. Network: Computation in Neural Systems.

Herrera-Valdez, M, EC McKiernan, SD Berger, S Ryglewski, C Duch and S Crook (2012) Relating ion channel expression, bifurcation structure, and diverse firing patterns in a model of an identified motor neuron. Journal of Computational Neuroscience.

McCamy, MB, J Otero-Millan, SL Macknik, Y Yang, XG Troncoso, SM Baer, SM Crook, S Martinez-Conde (2012) Microsaccadic efficacy and contribution to foveal and peripheral vision. Journal of Neuroscience.

Venugopal, S, TM Hamm, SM Crook and R Jung (2011) Recurrent inhibitory control of alpha motoneuron excitability after spinal cord injury -- insights from a computational model. Journal of Neurophysiology. 106:(5):2167-2179. PubMed

Kurian, M, SM Crook and R Jung (2011) Motoneuron models of self-sustained firing after spinal cord injury. Journal of Computational Neuroscience. 31(3):625-645. PubMed, ModelDB

Gleeson, P, S Crook, R Cannon, M Hines, G Billings, M Farinella, TM Morse, A Davison, S Ray, U Bhalla, SR Barnes, YD Dimitrova and RA Silver (2010) NeuroML: a simulator-independent language for describing data-driven models of neurons and networks with a high degree of biological realism. PLoS Computational Biology. 6(6): e1000815. PubMed

Baer, SM, S Crook, M Dur-e-Ahmad and Z Jackiewicz (2009) Numerical solution of calcium-mediated dendritic branch model. Journal of Computational and Applied Mathematics. 229:416-424. Science Direct

Dur-e-Ahmad, M, Z Jackiewicz, B Zubik-Kowal and S Crook (2007) A variant of pseudospectral method for activity-dependent dendritic branch model. Journal of Neuroscience Methods. 165:306-319. PubMed

Crook SM, M Dur-e-Ahmad and SM Baer (2007) A model of activity-dependent changes in dendritic spine density and spine structure. Mathematical Biosciences and Engineering. 4(4):617-631. PubMed, ModelDB

Crook, S, P Gleeson, F Howell, J Svitak and RA Silver (2007) MorphML: Level 1 of the NeuroML standards for neuronal morphology data and model specification. Neuroinformatics. 5(2):96-104. PubMed

Qi, W and S Crook (2004) Tools for neuroinformatic data exchange: An XML application for neuronal morphology data. Neurocomputing. 58-60C:1091-1095. Science Direct

Eaton, CD, S Crook, G Cummins and GA Jacobs (2004) Modeling ion channels from the cricket cercal sensory system. Neurocomputing. 58-60C:409-415. Science Direct

Cummins, GI, SM Crook, AG Dimitrov, T Ganje, GA Jacobs and JP Miller (2003) Structural and biophysical mechanisms underlying dynamic sensitivity of primary sensory interneurons in the cricket cercal sensory system. Neurocomputing. 52:45- 52. ScienceDirect

Crook, S, J Miller and G Jacobs (2002) Modeling frequency encoding in the cricket cercal sensory system. Neurocomputing 44:769-773. Science Direct

Crook, SM, GB Ermentrout and JM Bower. (1998) Spike frequency adaptation affects the synchronization properties of cortical networks. Neural Computation 10:837-854. PubMed

Crook, SM, GB Ermentrout and JM Bower (1998) Dendritic and synaptic effects in systems of coupled cortical oscillators. Journal of Computational Neuroscience 5:315-329. PubMed

Crook, SM and GB Ermentrout (1997) An analysis of the adaptive behavior of piriform cortex pyramidal cells. In Computational Neuroscience Trends in Research 1996, JM Bower (Ed.), Plenum Publishers, 170-175. Scientific Commons

Crook, SM, GB Ermentrout, MC Vanier and JM Bower (1997) The role of axonal delay in the synchronization of networks of coupled cortical oscillators. Journal of Computational Neuroscience 4:161-172. PubMed

Ermentrout, GB, S Crook and JM Bower (1996) Connectivity, axonal delay, and synchrony in cortical oscillators. In Computational Neuroscience Trends in Research 1995, JM Bower (Ed.), Academic Press, 167-172. Research Gate

Book Chapters

Gleeson, P, V Steuber, RA Silver and S Crook (in press) NeuroML. In Le Novere, ed. Computational Systems Biology, Springer.

Crook, S, HE Plesser, A Davison (in press) Lessons from the past: approaches for reproducibility in computational neuroscience. In JM Bower, ed. 20 Years of Computational Neuroscience, Springer.

Venugopal, S, S Crook, M Srivatsan and R Jung (2011) Principles of computational neuroscience. In Jung, ed. Biomimetic and Biohybrid Living-Hardware Systems, Wiley.

Gunay, C, TG Smolinski, WW Lytton, TM Morse, P Gleeson, S Crook, V Steuber, A Silver, H Voicu, P Andrews, H Bokil, H Maniar, C Loader, S Mehta, D Kleinfeld, D Thomson, PP Mitra, G Aaron and J-M Fellous (2008) Computational intelligence in electrophysiology: Trends and open problems. In Smolinski, Milanova and Hassanien, eds. Applications of Computational Intelligence in Biology, Springer, Berlin/Heidelberg.

Crook, S and F Howell (2007) XML for data representation and model specification in neuroscience. in Crasto, ed. Methods in Molecular Biology Book Series: Neuroinformatics, Humana Press. PubMed

Crook, S and A Cohen (1995) Central pattern generators. In Bower and Beeman, eds. The Book of GENESIS: A workbook of tutorials for the GEneral NEural SImulation System, Chapter 6. TELOS Publishers.