Date	Topic	Lecturer
9/2	Introduction to Genomics	Hutchison
9/4	Introduction to Computational Genomics	Crook & Hutchison
9/9	Whole Genome Shotgun and Assembly	Bult
9/11	Introduction to Genome Sequence Analysis	Bult
9/16	Introduction to Databases I	Nittel
9/18	Introduction to Databases II	Nittel
9/23	Pairwise Alignment--Dynamic Programming	Crook
9/25	More on Sequence Alignment	Crook
9/30	More on Sequence Alignment	Crook
10/2	Gene Finding	Crook
10/7	Pattern Identification in Sequences	Graber
10/9	HMM Models of Sequences	Graber
10/14	Fall Break
10/16	Gene Expression Databases	Ringwald
10/21	Expression Data Analysis: Clustering	Ressom
10/23	Microarray Experimental Design and Statistical Analysis	Crook
10/28	Gene Network Models	Crook
10/30	Continuous Modeling Techniques	Crook
11/4	Modeling Gene Regulation	Crook
11/6	Developmental Pathways and Databases	O'Brien
11/11	Phylogenetic Analysis	Allman
11/13	Stochastic Models	Crook
11/18	Biological Examples	Crook
11/20	Protein Structure	Fort
11/25	Protein Structure Modeling	Fort
11/27	Thanksgiving
12/2	Protein Structure Prediction	Crook
12/4	Topological Models	Franzosa
12/9	Student Presentations
12/11	Student Presentations